Abstraction hierarchy to define biofoundry workflows and operations for interoperable synthetic biology research and applications
  • Kim, Haseong
  • Hillson, Nathan J.
  • Cho, Byung-Kwan
  • Sung, Bong Hyun
  • Lee, Dae-Hee
  • 외 13명
Citations

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Citations

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초록

Lack of standardization in biofoundries limits the scalability and efficiency of synthetic biology research. Here, we propose an abstraction hierarchy that organizes biofoundry activities into four interoperable levels: Project, Service/Capability, Workflow, and Unit Operation, effectively streamlining the Design-Build-Test-Learn (DBTL) cycle. This framework enables more modular, flexible, and automated experimental workflows. It improves communication between researchers and systems, supports reproducibility, and facilitates better integration of software tools and artificial intelligence. Our approach lays the foundation for a globally interoperable biofoundry network, advancing collaborative synthetic biology and accelerating innovation in response to scientific and societal challenges.

키워드

LIMS
제목
Abstraction hierarchy to define biofoundry workflows and operations for interoperable synthetic biology research and applications
저자
Kim, HaseongHillson, Nathan J.Cho, Byung-KwanSung, Bong HyunLee, Dae-HeeKim, Dong-MyungOh, Min-KyuChang, Matthew WookJin, Yong-SuRosser, Susan J.Vegh, PeterFragkoudis, RennosLe Feuvre, RosalindScrutton, Nigel S.Storch, MarkoSeong, WonjaeFreemont, Paul S.Lee, Seung-Goo
DOI
10.1038/s41467-025-61263-6
발행일
2025-07
유형
Review
저널명
Nature Communications
16
1